samtools view -h CD_21_13116_XT_CF.R1_val_1_bismark_bt2_pe_sorted.bam | python DMRfinder-master/extract_CpG_data.py -b -i - -o CD_21_13116_XT_CF.R1_val_1_bismark_bt2_pe_sorted.cov -v
samtools view -h ../CD_21_13116_XT_CF/CD_21_13116_XT_CF.R1_val_1_bismark_bt2_pe.deduplicated_sorted.bam | python extract_CpG_data.py -b -i - -o CD_21_13116_XT_CF.R1_val_1_bismark_bt2_pe_sorted.cov -v
